Selected Publications

1. Fungal taxonomy and molecular phylogenetics

1. Shenoy, B. D., Jeewon, R., Wu, W. P., Bhat, D. J., & Hyde, K. D. (2006).
Ribosomal and RPB2 DNA sequence analyses suggest that Sporidesmium and morphologically similar genera are polyphyletic.
Mycological Research, 110(8), 916–928.
DOI: https://doi.org/10.1016/j.mycres.2006.06.004

2. Shenoy, B. D., Jeewon, R., Wang, H. K., Kaur, A., Ho, W. H., Bhat, D. J., Crous, P. W., & Hyde, K. D. (2010).
Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides.
Fungal Diversity, 44, 161–169.
DOI: https://doi.org/10.1007/s13225-010-0059-8

3. Sharma, G., Kumar, N., Weir, B. S., Hyde, K. D., & Shenoy, B. D. (2013).
The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica.
Fungal Diversity, 61, 117–138.
DOI: https://doi.org/10.1007/s13225-013-0247-4

4. Sharma, G., Pinnaka, A. K., & Shenoy, B. D. (2015).
Resolving the Colletotrichum siamense species complex using ApMat marker.
Fungal Diversity, 71, 247–264.
DOI: https://doi.org/10.1007/s13225-014-0312-7

5. Wang, M. M., Shenoy, B. D., Li, W., & Cai, L. (2017).
Molecular phylogeny of Neodevriesia, with two new species and several new combinations.
Mycologia, 109(6), 965–974.
DOI: https://doi.org/10.1080/00275514.2017.1415075

2. Fungal genomics and molecular identification

6. Bengtsson, J., Eriksson, K. M., Hartmann, M., Wang, Z., Shenoy, B. D., et al. (2011).
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
Antonie van Leeuwenhoek, 100, 471–475.
DOI: https://doi.org/10.1007/s10482-011-9598-6

7. Agrawal, Y., Khatri, I., Subramanian, S., & Shenoy, B. D. (2015).
Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii.
Genome Biology and Evolution, 7(3), 916–930.
DOI: https://doi.org/10.1093/gbe/evv037

3. Marine fungal diversity and environmental microbiology

8. Sanyal, O., Shinde, V. L., Meena, R. M., Damare, S., & Shenoy, B. D. (2016).
The ITS-based phylogeny of fungi associated with tarballs.
Marine Pollution Bulletin, 113(1–2), 277–281.
DOI: https://doi.org/10.1016/j.marpolbul.2016.09.052

9. Shinde, V. L., Meena, R. M., & Shenoy, B. D. (2018).
Phylogenetic characterization of culturable bacteria and fungi associated with tarballs from Betul beach, Goa, India.
Marine Pollution Bulletin, 128, 593–600.
DOI: https://doi.org/10.1016/j.marpolbul.2018.01.064

10. Shenoy, B. D., Khandeparker, R. D. S., Fernandes, P., & Amberkar, U. (2024).
Fungal diversity associated with Goa's tarballs: Insights from ITS region amplicon sequencing.
Fungal Biology, 128(3), 1751–1757.
DOI: https://doi.org/10.1016/j.funbio.2024.03.001

11. Fernandes, C., Kankonkar, H., Meena, R. M., Menezes, G., Shenoy, B. D., & Khandeparker, R. (2019).
Metagenomic analysis of tarball-associated bacteria from Goa, India.
Marine Pollution Bulletin, 141, 398–403.
DOI: https://doi.org/10.1016/j.marpolbul.2019.02.040

12. Gawas, V. S., Shivaramu, M. S., Damare, S. R., Pujitha, D., Meena, R. M., & Shenoy, B. D. (2019).
Diversity and extracellular enzyme activities of heterotrophic bacteria from sediments of the Central Indian Ocean Basin.
Scientific Reports, 9, Article 9403.
DOI: https://doi.org/10.1038/s41598-019-45792-x

13. Fernandes, G. L., Shenoy, B. D., Menezes, L. D., Meena, R. M., & Damare, S. R. (2019).
Prokaryotic diversity in oxygen depleted waters of the Bay of Bengal inferred using culture-dependent and -independent methods.
Indian Journal of Microbiology, 59, 193–199.
DOI: https://doi.org/10.1007/s12088-019-00786-1

4. Recent perspectives on fungal taxonomy

14. Shenoy, B. D. (2025).
Do you believe in “new” fungal species?
Mycological Spectrum, 1(1), 47–58.
DOI: https://doi.org/10.64993/MS.1.1.4

5. Doctoral thesis

15. Shenoy, B. D. (2007).
Multigene phylogeny of selected anamorphic ascomycetes.
Ph.D. thesis, The University of Hong Kong.
DOI: https://doi.org/10.5353/th_b3955826